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1

Germin-like proteins (GLPs) in cereal genomes: gene clustering and dynamic roles in plant defence

James Breen, Matthew Bellgard

Journal:

Functional & Integrative Genomics

Year:

2010

Language:

english

File:

PDF, 669 KB

english, 2010

2

High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

Dáithí C. Murray, Stuart G. Pearson, Richard Fullagar, Brian M. Chase, Jayne Houston, Jennifer Atchison, Nicole E. White, Matthew I. Bellgard, Edward Clarke, Mike Macphail, M. Thomas P. Gilbert, James

Journal:

Quaternary Science Reviews

Year:

2012

Language:

english

File:

PDF, 668 KB

english, 2012

3

Design, development and deployment of a web-based patient registry for rare genetic lipid disorders

Napier, Kathryn R., Hooper, Amanda J., Ng, David M., Render, Lee, Bell, Damon A., Pang, Jing, Watts, Gerald F., Bellgard, Matthew I., Burnett, John R.

Journal:

Year:

2020

File:

PDF, 355 KB

2020

4

ThalInd, a β-thalassemia and hemoglobinopathies database for India: defining a model country-specific and disease-centric bioinformatics resource

Sujata Sinha, Michael L. Black, Sarita Agarwal, Reena Das, Alan H. Bittles, Matthew Bellgard

Journal:

Year:

2011

Language:

english

File:

PDF, 294 KB

english, 2011

5

Dynamic Evolution of Genomes and the Concept of Genome Space

MATTHEW I. BELLGARD, TAKESHI ITOH, HIDEMI WATANABE, TADASHI IMANISHI, TAKASHI GOJOBORI

Journal:

Annals of the New York Academy of Sciences

Year:

1999

File:

PDF, 1.33 MB

1999

6

Metabarcoding avian diets at airports: implications for birdstrike hazard management planning

Coghlan, Megan L, White, Nicole E, Murray, Dáithí C, Houston, Jayne, Rutherford, William, Bellgard, Matthew I, Haile, James, Bunce, Michael

Journal:

Investigative Genetics

Year:

2013

Language:

english

File:

PDF, 633 KB

english, 2013

7

The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads

McCooke, John K., Guerrero, Felix D., Barrero, Roberto A., Black, Michael, Hunter, Adam, Bell, Callum, Schilkey, Faye, Miller, Robert J., Bellgard, Matthew I.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.20 MB

english, 2015

8

A web-based, patient driven registry for Angelman syndrome: the global Angelman syndrome registry

Napier, Kathryn R., Tones, Megan, Simons, Chloe, Heussler, Helen, Hunter, Adam A., Cross, Meagan, Bellgard, Matthew I.

Journal:

Orphanet Journal of Rare Diseases

Year:

2017

Language:

english

File:

PDF, 541 KB

english, 2017

9

RD-RAP: beyond rare disease patient registries, devising a comprehensive data and analytic framework

Bellgard, Matthew I., Snelling, Tom, McGree, James M.

Journal:

Orphanet Journal of Rare Diseases

Year:

2019

Language:

english

File:

PDF, 930 KB

english, 2019

10

RD-RAP: beyond rare disease patient registries, devising a comprehensive data and analytic framework

Bellgard, Matthew I., Snelling, Tom, McGree, James M.

Journal:

Orphanet Journal of Rare Diseases

Year:

2019

File:

PDF, 930 KB

2019

11

Suppressive subtractive hybridization analysis of Rhipicephalus (Boophilus) microplus larval and adult transcript expression during attachment and feeding

Ala E. Lew-Tabor, Paula M. Moolhuijzen, Megan E. Vance, Sebastian Kurscheid, Manuel Rodriguez Valle, Sandra Jarrett, Catherine M. Minchin, Louise A. Jackson, Nick N. Jonsson, Matthew I. Bellgard, Feli

Journal:

Veterinary Parasitology

Year:

2010

Language:

english

File:

PDF, 1.15 MB

english, 2010

12

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tickRhipicephalus (Boophilus) microplus

Roberto A Barrero, Gabriel Keeble-Gagnère, Bing Zhang, Paula Moolhuijzen, Kazuho Ikeo, Yoshio Tateno, Takashi Gojobori, Felix D Guerrero, Ala Lew-Tabor, Matthew Bellgard

Journal:

Year:

2011

Language:

english

File:

PDF, 3.44 MB

english, 2011

13

De novo assembly ofEuphorbia fischerianaroot transcriptome identifies prostratin pathway related genes

Roberto A Barrero, Brett Chapman, Yanfang Yang, Paula Moolhuijzen, Gabriel Keeble-Gagnère, Nan Zhang, Qi Tang, Matthew I Bellgard, Deyou Qiu

Journal:

Year:

2011

Language:

english

File:

PDF, 604 KB

english, 2011

14

Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes inDrosophila

Sebastian Kurscheid, Ala E Lew-Tabor, Manuel Rodriguez Valle, Anthea G Bruyeres, Vivienne J Doogan, Ulrike G Munderloh, Felix D Guerrero, Roberto A Barrero, Matthew I Bellgard

Journal:

BMC Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.40 MB

english, 2009

15

The Evolution of MHC Diversity by Segmental Duplication and Transposition of Retroelements

Jerzy K. Kulski, Silvana Gaudieri, Matthew Bellgard, Lois Balmer, Keith Giles, Hidetoshi Inoko, Roger L. Dawkins

Journal:

Journal of Molecular Evolution

Year:

1998

Language:

english

File:

PDF, 8 KB

english, 1998

16

Gene expression profiling of Japanese psoriatic skin reveals an increased activity in molecular stress and immune response signals

Jerzy K. Kulski, William Kenworthy, Matthew Bellgard, Ross Taplin, Koichi Okamoto, Akira Oka, Tomotaka Mabuchi, Akira Ozawa, Gen Tamiya, Hidetoshi Inoko

Journal:

Journal of Molecular Medicine

Year:

2005

Language:

english

File:

PDF, 222 KB

english, 2005

17

Genomic and Phylogenetic Analysis of the S100A7 (Psoriasin) Gene Duplications Within the Region of the S100 Gene Cluster on Human Chromosome 1q21

Jerzy K. Kulski, Chew Ping K. Lim, David S. Dunn, Matthew Bellgard

Journal:

Journal of Molecular Evolution

Year:

2003

Language:

english

File:

PDF, 605 KB

english, 2003

18

Early Detection of G + C Differences in Bacterial Species Inferred from the Comparative Analysis of the Two Completely SequencedHelicobacter pyloriStrains

Matthew Bellgard, David Schibeci, Edward Trifonov, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 913 KB

english, 2001

19

Intragenic Variation of Synonymous Substitution Rates Is Caused by Nonrandom Mutations at Methylated CpG

Kazuhisa Tsunoyama, Matthew I. Bellgard, Takashi Gojobori

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 2.55 MB

english, 2001

20

Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison

Chengdao Li, Peixiang Ni, Michael Francki, Adam Hunter, Yong Zhang, David Schibeci, Heng Li, Allen Tarr, Jun Wang, Mehmet Cakir, Jun Yu, Matthew Bellgard, Reg Lance, Rudi Appels

Journal:

Functional & Integrative Genomics

Year:

2004

Language:

english

File:

PDF, 494 KB

english, 2004

21

Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat

Michael Francki, Meredith Carter, Karon Ryan, Adam Hunter, Matthew Bellgard, Rudi Appels

Journal:

Functional & Integrative Genomics

Year:

2004

Language:

english

File:

PDF, 1.40 MB

english, 2004

22

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries

Tim T. Binnewies, Yair Motro, Peter F. Hallin, Ole Lund, David Dunn, Tom La, David J. Hampson, Matthew Bellgard, Trudy M. Wassenaar, David W. Ussery

Journal:

Functional & Integrative Genomics

Year:

2006

Language:

english

File:

PDF, 827 KB

english, 2006

23

The transcript repeat element: the human Alu sequence as a component of gene networks influencing cancer

Paula Moolhuijzen, Jerzy K. Kulski, David S. Dunn, David Schibeci, Roberto Barrero, Takashi Gojobori, Matthew Bellgard

Journal:

Functional & Integrative Genomics

Year:

2010

Language:

english

File:

PDF, 401 KB

english, 2010

24

Diverse approaches to achieving grain yield in wheat

Roberto A. Barrero, Matthew Bellgard, Xueyong Zhang

Journal:

Functional & Integrative Genomics

Year:

2011

Language:

english

File:

PDF, 1.11 MB

english, 2011

25

A Bioinformatics Framework for plant pathologists to deliver global food security outcomes

Matthew I. Bellgard, Stanley E. Bellgard

Journal:

Australasian Plant Pathology

Year:

2012

Language:

english

File:

PDF, 518 KB

english, 2012

26

[AIP COMPUTATIONAL MODELS FOR LIFE SCIENCES/CMLS '07 - ()] AIP Conference Proceedings - A Bioinformatics Reference Model: Towards a Framework for Developing and Organising Bioinformatic Resources

Hiew, Hong Liang, Bellgard, Matthew, Pham, Tuan D., Zhou, Xiaobo

Year:

2007

Language:

english

File:

PDF, 986 KB

english, 2007

27

A modular approach to disease registry design: Successful adoption of an internet-based rare disease registry

Matthew I Bellgard, Andrew Macgregor, Fred Janon, Adam Harvey, Peter O'Leary, Adam Hunter, Hugh Dawkins

Journal:

Year:

2012

Language:

english

File:

PDF, 738 KB

english, 2012

28

The Evolution of MHC Diversity by Segmental Duplication and Transposition of Retroelements

Kulski, Jerzy K., Gaudieri, Silvana, Bellgard, Matthew, Balmer, Lois, Giles, Keith, Inoko, Hidetoshi, Dawkins, Roger L.

Journal:

Journal of Molecular Evolution

Year:

1997

Language:

english

File:

PDF, 1.87 MB

english, 1997

29

CattleTickBase: An integrated Internet-based bioinformatics resource for Rhipicephalus (Boophilus) microplus

Matthew I. Bellgard, Paula M. Moolhuijzen, Felix D. Guerrero, David Schibeci, Manuel Rodriguez-Valle, Daniel G. Peterson, Scot E. Dowd, Roberto Barrero, Adam Hunter, Robert J. Miller, Ala E. Lew-Tabor

Journal:

International Journal for Parasitology

Year:

2012

Language:

english

File:

PDF, 641 KB

english, 2012

30

Identification of genes associated with prophage-like gene transfer agents in the pathogenic intestinal spirochaetes Brachyspira hyodysenteriae, Brachyspira pilosicoli and Brachyspira intermedia

Yair Motro, Tom La, Matthew I. Bellgard, David S. Dunn, Nyree D. Phillips, David J. Hampson

Journal:

Veterinary Microbiology

Year:

2009

Language:

english

File:

PDF, 344 KB

english, 2009

31

A reverse vaccinology approach to swine dysentery vaccine development

Yong Song, Tom La, Nyree D. Phillips, Matthew I. Bellgard, David J. Hampson

Journal:

Veterinary Microbiology

Year:

2009

Language:

english

File:

PDF, 600 KB

english, 2009

32

Multilocus sequence typing as a tool for studying the molecular epidemiology and population structure of Brachyspira hyodysenteriae

Tom La, Nyree D. Phillips, Belinda L. Harland, Phatthanaphong Wanchanthuek, Matthew I. Bellgard, David J. Hampson

Journal:

Veterinary Microbiology

Year:

2009

Language:

english

File:

PDF, 284 KB

english, 2009

33

Evidence that the 36 kb plasmid of Brachyspira hyodysenteriae contributes to virulence

Tom La, Nyree D. Phillips, Phatthanaphong Wanchanthuek, Matthew I. Bellgard, Amanda J. O’Hara, David J. Hampson

Journal:

Veterinary Microbiology

Year:

2011

Language:

english

File:

PDF, 233 KB

english, 2011

34

Inferring the direction of evolutionary changes of genomic base composition

Matthew I Bellgard, Takashi Gojobori

Journal:

Trends in Genetics

Year:

1999

Language:

english

File:

PDF, 377 KB

english, 1999

35

Reassociation kinetics-based approach for partial genome sequencing of the cattle tick,Rhipicephalus (Boophilus) microplus

Felix D Guerrero, Paula Moolhuijzen, Daniel G Peterson, Shelby Bidwell, Elisabet Caler, Matthew Bellgard, Vishvanath M Nene, Appolinaire Djikeng

Journal:

Year:

2010

Language:

english

File:

PDF, 1004 KB

english, 2010

36

Comparative microarray analysis ofRhipicephalus (Boophilus) microplusexpression profiles of larvae pre-attachment and feeding adult female stages onBos indicusandBos tauruscattle

Manuel Rodriguez-Valle, Ala Lew-Tabor, Cedric Gondro, Paula Moolhuijzen, Megan Vance, Felix D Guerrero, Matthew Bellgard, Wayne Jorgensen

Journal:

Year:

2010

Language:

english

File:

PDF, 475 KB

english, 2010

37

Genomic analysis ofCampylobacter fetussubspecies: identification of candidate virulence determinants and diagnostic assay targets

Paula M Moolhuijzen, Ala E Lew-Tabor, Bartosz M Wlodek, Fernán G Agüero, Diego J Comerci, Rodolfo A Ugalde, Daniel O Sanchez, Rudi Appels, Matthew Bellgard

Journal:

BMC Microbiology

Year:

2009

Language:

english

File:

PDF, 507 KB

english, 2009

38

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block

James Breen, Thomas Wicker, Xiuying Kong, Juncheng Zhang, Wujun Ma, Etienne Paux, Catherine Feuillet, Rudi Appels, Matthew Bellgard

Journal:

BMC Plant Biology

Year:

2010

Language:

english

File:

PDF, 4.62 MB

english, 2010

39

Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain

James Breen, Dora Li, David S Dunn, Ferenc Békés, Xiuying Kong, Juncheng Zhang, Jizeng Jia, Thomas Wicker, Rohit Mago, Wujun Ma, Matthew Bellgard, Rudi Appels

Journal:

BMC Plant Biology

Year:

2010

Language:

english

File:

PDF, 1.66 MB

english, 2010

40

Bread matters: a national initiative to profile the genetic diversity of Australian wheat

David Edwards, Stephen Wilcox, Roberto A. Barrero, Delphine Fleury, Colin R. Cavanagh, Kerrie L. Forrest, Matthew J. Hayden, Paula Moolhuijzen, Gabriel Keeble-Gagnère, Matthew I. Bellgard, Michał T. L

Journal:

Plant Biotechnology Journal

Year:

2012

Language:

english

File:

PDF, 75 KB

english, 2012

41

Microarray analysis using bioinformatics analysis audit trails (BAATs)

Matthew Bellgard, Adam Hunter, William Kenworthy

Journal:

Comptes Rendus Biologies

Year:

2003

Language:

english

File:

PDF, 214 KB

english, 2003

42

A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene

Wayne K. Greene, Yovina Sontani, Margaret A. Sharp, David S. Dunn, Ursula R. Kees, Matthew I. Bellgard

Journal:

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

43

Identification of a ribonuclease H gene in both Mycoplasma genitalium and Mycoplasma pneumoniae by a new method for exhaustive identification of ORFs in the complete genome sequences

Matthew I Bellgard, Takashi Gojobori

Journal:

Year:

1999

Language:

english

File:

PDF, 75 KB

english, 1999

44

MHC Haplotype Analysis by Artificial Neural Networks

Matthew I Bellgard, Guan K Tay, H.L Hiew, Campbell S Witt, Natkunam Ketheesan, Frank T Christiansen, Roger L Dawkins

Journal:

Human Immunology

Year:

1998

Language:

english

File:

PDF, 253 KB

english, 1998

45

Significant differences between the G+C content of synonymous codons in orthologous genes and the genomic G+C content

Matthew I. Bellgard, Takashi Gojobori

Journal:

Year:

1999

Language:

english

File:

PDF, 138 KB

english, 1999

46

Yabi: An online research environment for grid, high performance and cloud computing

Adam A Hunter, Andrew B Macgregor, Tamas O Szabo, Crispin A Wellington, Matthew I Bellgard

Journal:

Source Code for Biology and Medicine

Year:

2012

Language:

english

File:

PDF, 917 KB

english, 2012

47

The New Zealand Neuromuscular Disease Registry

Rodrigues, Miriam, Hammond-Tooke, Graeme, Kidd, Alexa, Love, Donald, Patel, Rakesh, Dawkins, Hugh, Bellgard, Matthew, Roxburgh, Richard

Journal:

Journal of Clinical Neuroscience

Year:

2012

Language:

english

File:

PDF, 126 KB

english, 2012

48

The complexity ofRhipicephalus (Boophilus) microplusgenome characterised through detailed analysis of two BAC clones

Paula M Moolhuijzen, Ala E Lew-Tabor, Jess A T Morgan, Manuel Rodriguez Valle, Daniel G Peterson, Scot E Dowd, Felix D Guerrero, Matthew I Bellgard, Rudi Appels

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 1.42 MB

english, 2011

49

The Genetics of Symbiotic Nitrogen Fixation: Comparative Genomics of 14 Rhizobia Strains by Resolution of Protein Clusters

Black, Michael, Moolhuijzen, Paula, Chapman, Brett, Barrero, Roberto, Howieson, John, Hungria, Mariangela, Bellgard, Matthew

Journal:

Year:

2012

Language:

english

File:

PDF, 526 KB

english, 2012

50

Dispelling myths about rare disease registry system development

Bellgard, Matthew, Beroud, Christophe, Parkinson, Kay, Harris, Tess, Ayme, Segolene, Baynam, Gareth, Weeramanthri, Tarun, Dawkins, Hugh, Hunter, Adam

Journal:

Source Code for Biology and Medicine

Year:

2013

Language:

english

File:

PDF, 323 KB

english, 2013